¸ñÀû: Permanent hearing loss primarily results from the inability of
the
mammalian cochlea to replace lost inner ear hair cells. However,
neonatal mice exhibit a unique capacity: isolated cochlear floor
cells
can efficiently proliferate in vitro and form organoids that
harbor
new hair cells and supporting cell populations. In this study, we
isolated extracellular vesicles (EVs) from organoids, analyzed
the
miRNAs derived from them, and compared those with publicly
available
dataset to identify gene regulatory elements that coordinate
inner ear
proliferation and regeneration. ¹æ¹ý:We utilized cochlear floor cells from postnatal day two mice and
optimized the culture conditions to efficiently grow organoids
that
exhibit progenitor properties. Next, we isolated EVs from the
culture
media of organoids in their proliferative and differentiation
stage. We
analyzed miRNAs contained in these EVs to identify potential
regulators
that drive or modulate organoid generation. miRNA sequencing data
from
organoid EVs were then compared with mRNA-sequencing data and
single
cell sequencing data from publicly available dataset. °á°ú:We identified 138 mature miRNAs in organoids EVs. A total of 91 miRNAs
differed more than 2-fold between these groups, with 35 miRNAs (6
upregulated and 29 downregulated in organoid EVs) exhibiting
statistically significant differences. Target gene prediction and
pathway analysis resulted in 7 miRNAs and 195 targets genes related
with the organoid differentiation. Further target gene prediction,
protein-protein network, and trajectory analysis revealed 18 genes (9
upregulated and 9 downregulated) related with organoid
differentiation. In GO analysis (biological process), these target
genes were associated with pathways related to epithelial cell
differentiation, regulation of gliogenesis, glial cell proliferation,
regulation of neurogenesis, small GTPase mediated signal transduction,
Ras protein signal transduction, and cellular response to
organonitrogen compound. This indicates that the miRNAs in organoid-
derived EVs may impact processes associated with cell differentiation
and the generation of inner ear cell types. °á·Ð:Our study comprehensively inventoried miRNAs contained in EVs
released
by growing inner ear organoids. Our differential miRNA expression
analysis provides insight into regulatory mechanisms that promote
cochlear floor cell proliferation and organoid formation, which
could
be leveraged in miRNA-based therapeutic approaches. |